MRIQC: individual T1w report

Summary

Subject ID: 034_ControlPre.
Date and time: 2018-05-06, 23:23.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.28368753264543
cnr			4.469343521669709
efc			0.6021761697448668
fber			100.342529296875
fwhm	avg		3.92737
fwhm	x		3.71114
fwhm	y		4.20038
fwhm	z		3.87059
icvs	csf		0.1803779166572785
icvs	gm		0.488579332055619
icvs	wm		0.3310427512871025
inu	med		0.8426206707954407
inu	range		0.2762276530265808
qi	1		0.0
qi	2		0.0006787818853319313
rpve	csf		25.708958568597556
rpve	gm		11.186928477136197
rpve	wm		18.273500246500628
size	x		180
size	y		256
size	z		256
snr	csf		2.725744997757049
snr	gm		11.295397953081117
snr	total		11.054279706358633
snr	wm		19.141696168237733
snrd	csf		16.02627412212122
snrd	gm		29.11973654234247
snrd	total		30.048594737167008
snrd	wm		44.99977354703734
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.5466113666108483
summary	bg	mad	14.558774948120117
summary	bg	mean	52.167884826660156
summary	bg	median	50.76372528076172
summary	bg	n	2961267.0
summary	bg	p05	30.568610954284665
summary	bg	p95	78.74668655395507
summary	bg	stdv	14.938400268554688
summary	csf	k	-0.1837931444920402
summary	csf	mad	146.5416717529297
summary	csf	mean	355.54248046875
summary	csf	median	356.14404296875
summary	csf	n	15827.0
summary	csf	p05	156.15074615478517
summary	csf	p95	564.0811950683593
summary	csf	stdv	130.65521240234375
summary	gm	k	0.436685620541716
summary	gm	mad	54.2908935546875
summary	gm	mean	648.8292236328125
summary	gm	median	647.1136474609375
summary	gm	n	60708.0
summary	gm	p05	558.3293212890626
summary	gm	p95	746.2997924804687
summary	gm	stdv	57.289554595947266
summary	wm	k	0.8466241492437243
summary	wm	mad	45.82081604003906
summary	wm	mean	996.394775390625
summary	wm	median	1000.0079345703125
summary	wm	n	196858.0
summary	wm	p05	900.8832244873047
summary	wm	p95	1075.2510681152344
summary	wm	stdv	52.24225616455078
tpm	overlap	csf	0.2034439891576767
tpm	overlap	gm	0.5393782258033752
tpm	overlap	wm	0.5401885509490967
wm2max			0.6729651473476455

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	c53cce9126288b6ad1609b55f3b877fc
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.