MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.28368753264543
cnr4.469343521669709
efc0.6021761697448668
fber100.342529296875
fwhmavg3.92737
fwhmx3.71114
fwhmy4.20038
fwhmz3.87059
icvscsf0.1803779166572785
icvsgm0.488579332055619
icvswm0.3310427512871025
inumed0.8426206707954407
inurange0.2762276530265808
qi10.0
qi20.0006787818853319313
rpvecsf25.708958568597556
rpvegm11.186928477136197
rpvewm18.273500246500628
sizex180
sizey256
sizez256
snrcsf2.725744997757049
snrgm11.295397953081117
snrtotal11.054279706358633
snrwm19.141696168237733
snrdcsf16.02627412212122
snrdgm29.11973654234247
snrdtotal30.048594737167008
snrdwm44.99977354703734
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.5466113666108483
summarybgmad14.558774948120117
summarybgmean52.167884826660156
summarybgmedian50.76372528076172
summarybgn2961267.0
summarybgp0530.568610954284665
summarybgp9578.74668655395507
summarybgstdv14.938400268554688
summarycsfk-0.1837931444920402
summarycsfmad146.5416717529297
summarycsfmean355.54248046875
summarycsfmedian356.14404296875
summarycsfn15827.0
summarycsfp05156.15074615478517
summarycsfp95564.0811950683593
summarycsfstdv130.65521240234375
summarygmk0.436685620541716
summarygmmad54.2908935546875
summarygmmean648.8292236328125
summarygmmedian647.1136474609375
summarygmn60708.0
summarygmp05558.3293212890626
summarygmp95746.2997924804687
summarygmstdv57.289554595947266
summarywmk0.8466241492437243
summarywmmad45.82081604003906
summarywmmean996.394775390625
summarywmmedian1000.0079345703125
summarywmn196858.0
summarywmp05900.8832244873047
summarywmp951075.2510681152344
summarywmstdv52.24225616455078
tpmoverlapcsf0.2034439891576767
tpmoverlapgm0.5393782258033752
tpmoverlapwm0.5401885509490967
wm2max0.6729651473476455

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumc53cce9126288b6ad1609b55f3b877fc
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.